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Key Support

This part of the library implements support for public and private keys used for reading and writing Crypt4GH containers.

Protocol

oarepo_c4gh.key.key

An abstract Base Class for Asymmetric Secret Keys

This module contains only the interface specification for all key classes implementations.

Key

Bases: Protocol

This is an abstract class, containing only abstract methods used to compute the Diffie-Hellman key exchange over the Montgomery curve Curve25519 as specified by the X25519 standard and auxilliary informative helpers.

Source code in oarepo_c4gh/key/key.py 
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class Key(Protocol):
    """This is an abstract class, containing only abstract methods
    used to compute the Diffie-Hellman key exchange over the
    Montgomery curve Curve25519 as specified by the X25519 standard
    and auxilliary informative helpers.

    """

    @property
    @abstractmethod
    def public_key(self) -> bytes:
        """The derived classes must implement providing corresponding
        public key in this method.

        Returns:
            The 32 bytes of the public key.

        """
        ...

    @abstractmethod
    def compute_write_key(self, reader_public_key: bytes) -> bytes:
        """Accepts the intended reader public key and computes the
        shared secret based on the public and secret key (this key) of
        the writer particular key source implementation.

        Parameters:
            reader_public_key: the 32 bytes of the reader public key

        Returns:
            The shared secret as 32 bytes - usable as symmetric key.

        """
        ...

    @abstractmethod
    def compute_read_key(self, writer_public_key: bytes) -> bytes:
        """Accepts the writer public key and computes the shared
        secret based on the public and secret key (this key) of the
        reader particular key source implementation.

        Parameters:
            writer_public_key: the 32 bytes of the writer public key

        Returns:
            The shared secret as 32 bytes - usable as symmetric key.

        """
        ...

    @property
    @abstractmethod
    def can_compute_symmetric_keys(self) -> bool:
        """A predicate returning true if this key instance can perform
        read/write key derivation. This is usually determined by
        having access to the private key (for software implementation)
        or some other means of working with the private key (for HSM).

        Returns:
            true if it can perform symmetric key derivation

        """
        return False

    def __bytes__(self) -> bytes:
        """Default converter to bytes returns the public key bytes."""
        return self.public_key

can_compute_symmetric_keys: bool property

A predicate returning true if this key instance can perform read/write key derivation. This is usually determined by having access to the private key (for software implementation) or some other means of working with the private key (for HSM).

Returns:

Type Description
bool

true if it can perform symmetric key derivation

public_key: bytes property

The derived classes must implement providing corresponding public key in this method.

Returns:

Type Description
bytes

The 32 bytes of the public key.

__bytes__() -> bytes

Default converter to bytes returns the public key bytes.

Source code in oarepo_c4gh/key/key.py 
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def __bytes__(self) -> bytes:
    """Default converter to bytes returns the public key bytes."""
    return self.public_key

compute_read_key(writer_public_key: bytes) -> bytes

Accepts the writer public key and computes the shared secret based on the public and secret key (this key) of the reader particular key source implementation.

Parameters:

Name Type Description Default
writer_public_key bytes

the 32 bytes of the writer public key

 required

Returns:

Type Description
bytes

The shared secret as 32 bytes - usable as symmetric key.
Source code in oarepo_c4gh/key/key.py 
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@abstractmethod
def compute_read_key(self, writer_public_key: bytes) -> bytes:
    """Accepts the writer public key and computes the shared
    secret based on the public and secret key (this key) of the
    reader particular key source implementation.

    Parameters:
        writer_public_key: the 32 bytes of the writer public key

    Returns:
        The shared secret as 32 bytes - usable as symmetric key.

    """
    ...

compute_write_key(reader_public_key: bytes) -> bytes

Accepts the intended reader public key and computes the shared secret based on the public and secret key (this key) of the writer particular key source implementation.

Parameters:

Name Type Description Default
reader_public_key bytes

the 32 bytes of the reader public key

 required

Returns:

Type Description
bytes

The shared secret as 32 bytes - usable as symmetric key.
Source code in oarepo_c4gh/key/key.py 
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@abstractmethod
def compute_write_key(self, reader_public_key: bytes) -> bytes:
    """Accepts the intended reader public key and computes the
    shared secret based on the public and secret key (this key) of
    the writer particular key source implementation.

    Parameters:
        reader_public_key: the 32 bytes of the reader public key

    Returns:
        The shared secret as 32 bytes - usable as symmetric key.

    """
    ...

Implementations

oarepo_c4gh.key.software

A base class for all software-defined keys.

This module implements the Diffie-Hellman key exchange using software keys and NaCl bindings. The class contained here also provides an interface for setting the private key instance property by derived classes that should implement particular key loaders.

SoftwareKey

Bases: Key

This class implements the actual Diffie-Hellman key exchange with locally stored private key in the class instance.

Source code in oarepo_c4gh/key/software.py 
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class SoftwareKey(Key):
    """This class implements the actual Diffie-Hellman key exchange
    with locally stored private key in the class instance.

    """

    def __init__(self, key_data: bytes, only_public: bool = False) -> None:
        """Performs rudimentary key data validation and initializes
        either only the public key or both the public and private key.

        Parameters:
            key_data: the 32 bytes of key material
            only_public: whether this contains only the public point

        Raises:
            AssertionError: is the key_data does not contain exactly 32 bytes

        """
        assert len(key_data) == 32, (
            f"The X25519 key must be 32 bytes long" f" ({len(key_data)})!"
        )
        if only_public:
            self._public_key = key_data
            self._private_key = None
        else:
            private_key_obj = PrivateKey(key_data)
            self._private_key = bytes(private_key_obj)
            public_key_obj = private_key_obj.public_key
            self._public_key = bytes(public_key_obj)

    @property
    def public_key(self) -> bytes:
        """Returns the public key corresponding to the private key
        used.

        """
        return self._public_key

    def compute_write_key(self, reader_public_key: bytes) -> bytes:
        """Computes secret symmetric key used for writing Crypt4GH
        encrypted header packets. The instance of this class
        represents the writer key.

        Parameters:
            reader_public_key: the 32 bytes of the reader public key

        Returns:
            Writer symmetric key as 32 bytes.

        Raises:
            Crypt4GHKeyException: if only public key is available

        The algorithm used is not just a Diffie-Hellman key exchange
        to establish shared secret but it also includes derivation of
        two symmetric keys used in bi-directional connection. This
        pair of keys is derived from the shared secret concatenated
        with client public key and server public key by hashing such
        binary string with BLAKE2B-512 hash.

        For server - and therefore the writer - participant it is the
        "transmit" key of the imaginary connection.

        ```
        rx || tx = BLAKE2B-512(p.n || client_pk || server_pk)
        ```

        The order of shared secret and client and server public keys
        in the binary string being matches must be the same on both
        sides. Therefore the same symmetric keys are derived. However
        for maintaining this ordering, each party must know which one
        it is - otherwise even with correctly computed shared secret
        the resulting pair of keys would be different.

        """
        if self._private_key is None:
            raise Crypt4GHKeyException(
                "Only keys with private part can be used"
                " for computing shared key"
            )
        _, shared_key = crypto_kx_server_session_keys(
            self._public_key, self._private_key, reader_public_key
        )
        return shared_key

    def compute_read_key(self, writer_public_key: bytes) -> bytes:
        """Computes secret symmetric key used for reading Crypt4GH
        encrypted header packets. The instance of this class
        represents the reader key.

        See detailed description of ``compute_write_key``.

        For this function the "receive" key is used - which is the
        same as the "transmit" key of the writer.

        Parameters:
            writer_public_key: the 32 bytes of the writer public key

        Returns:
            Reader symmetric key as 32 bytes.

        Raises:
            Crypt4GHKeyException: if only public key is available

        """
        if self._private_key is None:
            raise Crypt4GHKeyException(
                "Only keys with private part can be used"
                " for computing shared key"
            )
        shared_key, _ = crypto_kx_client_session_keys(
            self._public_key, self._private_key, writer_public_key
        )
        return shared_key

    @property
    def can_compute_symmetric_keys(self) -> bool:
        """Returns True if this key contains the private part.

        Returns:
            True if private key is available.

        """
        return self._private_key is not None

    @classmethod
    def generate(self) -> None:
        return SoftwareKey(secrets.token_bytes(32))

can_compute_symmetric_keys: bool property

Returns True if this key contains the private part.

Returns:

Type Description
bool

True if private key is available.

public_key: bytes property

Returns the public key corresponding to the private key used.

__init__(key_data: bytes, only_public: bool = False) -> None

Performs rudimentary key data validation and initializes either only the public key or both the public and private key.

Parameters:

Name Type Description Default
key_data bytes

the 32 bytes of key material

 required
only_public bool

whether this contains only the public point

 False

Raises:

Type Description
AssertionError

is the key_data does not contain exactly 32 bytes
Source code in oarepo_c4gh/key/software.py 
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def __init__(self, key_data: bytes, only_public: bool = False) -> None:
    """Performs rudimentary key data validation and initializes
    either only the public key or both the public and private key.

    Parameters:
        key_data: the 32 bytes of key material
        only_public: whether this contains only the public point

    Raises:
        AssertionError: is the key_data does not contain exactly 32 bytes

    """
    assert len(key_data) == 32, (
        f"The X25519 key must be 32 bytes long" f" ({len(key_data)})!"
    )
    if only_public:
        self._public_key = key_data
        self._private_key = None
    else:
        private_key_obj = PrivateKey(key_data)
        self._private_key = bytes(private_key_obj)
        public_key_obj = private_key_obj.public_key
        self._public_key = bytes(public_key_obj)

compute_read_key(writer_public_key: bytes) -> bytes

Computes secret symmetric key used for reading Crypt4GH encrypted header packets. The instance of this class represents the reader key.

See detailed description of compute_write_key.

For this function the "receive" key is used - which is the same as the "transmit" key of the writer.

Parameters:

Name Type Description Default
writer_public_key bytes

the 32 bytes of the writer public key

 required

Returns:

Type Description
bytes

Reader symmetric key as 32 bytes.

Raises:

Type Description
Crypt4GHKeyException

if only public key is available
Source code in oarepo_c4gh/key/software.py 
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def compute_read_key(self, writer_public_key: bytes) -> bytes:
    """Computes secret symmetric key used for reading Crypt4GH
    encrypted header packets. The instance of this class
    represents the reader key.

    See detailed description of ``compute_write_key``.

    For this function the "receive" key is used - which is the
    same as the "transmit" key of the writer.

    Parameters:
        writer_public_key: the 32 bytes of the writer public key

    Returns:
        Reader symmetric key as 32 bytes.

    Raises:
        Crypt4GHKeyException: if only public key is available

    """
    if self._private_key is None:
        raise Crypt4GHKeyException(
            "Only keys with private part can be used"
            " for computing shared key"
        )
    shared_key, _ = crypto_kx_client_session_keys(
        self._public_key, self._private_key, writer_public_key
    )
    return shared_key

compute_write_key(reader_public_key: bytes) -> bytes

Computes secret symmetric key used for writing Crypt4GH encrypted header packets. The instance of this class represents the writer key.

Parameters:

Name Type Description Default
reader_public_key bytes

the 32 bytes of the reader public key

 required

Returns:

Type Description
bytes

Writer symmetric key as 32 bytes.

Raises:

Type Description
Crypt4GHKeyException

if only public key is available

The algorithm used is not just a Diffie-Hellman key exchange to establish shared secret but it also includes derivation of two symmetric keys used in bi-directional connection. This pair of keys is derived from the shared secret concatenated with client public key and server public key by hashing such binary string with BLAKE2B-512 hash.

For server - and therefore the writer - participant it is the "transmit" key of the imaginary connection.

rx || tx = BLAKE2B-512(p.n || client_pk || server_pk)

The order of shared secret and client and server public keys in the binary string being matches must be the same on both sides. Therefore the same symmetric keys are derived. However for maintaining this ordering, each party must know which one it is - otherwise even with correctly computed shared secret the resulting pair of keys would be different.

Source code in oarepo_c4gh/key/software.py 
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def compute_write_key(self, reader_public_key: bytes) -> bytes:
    """Computes secret symmetric key used for writing Crypt4GH
    encrypted header packets. The instance of this class
    represents the writer key.

    Parameters:
        reader_public_key: the 32 bytes of the reader public key

    Returns:
        Writer symmetric key as 32 bytes.

    Raises:
        Crypt4GHKeyException: if only public key is available

    The algorithm used is not just a Diffie-Hellman key exchange
    to establish shared secret but it also includes derivation of
    two symmetric keys used in bi-directional connection. This
    pair of keys is derived from the shared secret concatenated
    with client public key and server public key by hashing such
    binary string with BLAKE2B-512 hash.

    For server - and therefore the writer - participant it is the
    "transmit" key of the imaginary connection.

    ```
    rx || tx = BLAKE2B-512(p.n || client_pk || server_pk)
    ```

    The order of shared secret and client and server public keys
    in the binary string being matches must be the same on both
    sides. Therefore the same symmetric keys are derived. However
    for maintaining this ordering, each party must know which one
    it is - otherwise even with correctly computed shared secret
    the resulting pair of keys would be different.

    """
    if self._private_key is None:
        raise Crypt4GHKeyException(
            "Only keys with private part can be used"
            " for computing shared key"
        )
    _, shared_key = crypto_kx_server_session_keys(
        self._public_key, self._private_key, reader_public_key
    )
    return shared_key

oarepo_c4gh.key.c4gh

Class for loading the Crypt4GH reference key format.

C4GHKey

Bases: SoftwareKey

This class implements the loader for Crypt4GH key file format.

Source code in oarepo_c4gh/key/c4gh.py 
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class C4GHKey(SoftwareKey):
    """This class implements the loader for Crypt4GH key file format."""

    @classmethod
    def from_file(
        self, file_name: str, callback: callable = default_passphrase_callback
    ) -> Self:
        """Opens file stream and loads the Crypt4GH key from it.

        Parameters:
            file_name: path to the file with the key.
            callback: must return passphrase for decryption if called.

        Returns:
            Initialized C4GHKey instance.

        """
        return C4GHKey.from_stream(open(file_name, "rb"), callback)

    @classmethod
    def from_string(
        self, contents: str, callback: callable = default_passphrase_callback
    ) -> Self:
        """Converts string to bytes which is opened as binary stream
        and loads the Crypt4GH key from it.

        Parameters:
            contents: complete contents of the file with Crypt4GH key.
            callback: must return passphrase for decryption if called.

        Returns:
            Initialized C4GHKey instance.

        """
        return C4GHKey.from_bytes(bytes(contents, "ASCII"), callback)

    @classmethod
    def from_bytes(
        self, contents: bytes, callback: callable = default_passphrase_callback
    ) -> Self:
        """Opens the contents bytes as binary stream and loads the
        Crypt4GH key from it.

        Parameters:
            contents: complete contents of the file with Crypt4GH key.
            callback: must return passphrase for decryption if called.

        Returns:
            Initialized C4GHKey instance.

        """
        return C4GHKey.from_stream(BytesIO(contents), callback)

    @classmethod
    def from_stream(
        self,
        istream: RawIOBase,
        callback: callable = default_passphrase_callback,
    ) -> Self:
        """Parses the stream with stored key.

        Parameters:
            istream: input stream with the key file contents.
            callback: must return passphrase for decryption if called

        Returns:
            The newly constructed key instance.
        """
        slabel, sdata = decode_b64_envelope(istream)
        istream.close()
        if slabel == b"CRYPT4GH PUBLIC KEY":
            return C4GHKey(sdata, True)
        else:
            istreamb = BytesIO(sdata)
            check_c4gh_stream_magic(istreamb)
            kdf_name, kdf_rounds, kdf_salt = parse_c4gh_kdf_options(istreamb)
            cipher_name = decode_c4gh_bytes(istreamb)
            if cipher_name == b"none":
                secret_data = decode_c4gh_bytes(istreamb)
                return C4GHKey(secret_data, False)
            if cipher_name != b"chacha20_poly1305":
                raise Crypt4GHKeyException(
                    f"Unsupported cipher: {cipher_name}"
                )
            assert callable(
                callback
            ), "Invalid passphrase callback (non-callable)"
            passphrase = callback().encode()
            symmetric_key = derive_c4gh_key(
                kdf_name, passphrase, kdf_salt, kdf_rounds
            )
            nonce_and_encrypted_data = decode_c4gh_bytes(istreamb)
            nonce = nonce_and_encrypted_data[:12]
            encrypted_data = nonce_and_encrypted_data[12:]
            decrypted_data = ChaCha20Poly1305(symmetric_key).decrypt(
                nonce, encrypted_data, None
            )
            return C4GHKey(decrypted_data, False)

from_bytes(contents: bytes, callback: callable = default_passphrase_callback) -> Self classmethod

Opens the contents bytes as binary stream and loads the Crypt4GH key from it.

Parameters:

Name Type Description Default
contents bytes

complete contents of the file with Crypt4GH key.

 required
callback callable

must return passphrase for decryption if called.

 default_passphrase_callback

Returns:

Type Description
Self

Initialized C4GHKey instance.
Source code in oarepo_c4gh/key/c4gh.py 
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@classmethod
def from_bytes(
    self, contents: bytes, callback: callable = default_passphrase_callback
) -> Self:
    """Opens the contents bytes as binary stream and loads the
    Crypt4GH key from it.

    Parameters:
        contents: complete contents of the file with Crypt4GH key.
        callback: must return passphrase for decryption if called.

    Returns:
        Initialized C4GHKey instance.

    """
    return C4GHKey.from_stream(BytesIO(contents), callback)

from_file(file_name: str, callback: callable = default_passphrase_callback) -> Self classmethod

Opens file stream and loads the Crypt4GH key from it.

Parameters:

Name Type Description Default
file_name str

path to the file with the key.

 required
callback callable

must return passphrase for decryption if called.

 default_passphrase_callback

Returns:

Type Description
Self

Initialized C4GHKey instance.
Source code in oarepo_c4gh/key/c4gh.py 
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@classmethod
def from_file(
    self, file_name: str, callback: callable = default_passphrase_callback
) -> Self:
    """Opens file stream and loads the Crypt4GH key from it.

    Parameters:
        file_name: path to the file with the key.
        callback: must return passphrase for decryption if called.

    Returns:
        Initialized C4GHKey instance.

    """
    return C4GHKey.from_stream(open(file_name, "rb"), callback)

from_stream(istream: RawIOBase, callback: callable = default_passphrase_callback) -> Self classmethod

Parses the stream with stored key.

Parameters:

Name Type Description Default
istream RawIOBase

input stream with the key file contents.

 required
callback callable

must return passphrase for decryption if called

 default_passphrase_callback

Returns:

Type Description
Self

The newly constructed key instance.
Source code in oarepo_c4gh/key/c4gh.py 
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@classmethod
def from_stream(
    self,
    istream: RawIOBase,
    callback: callable = default_passphrase_callback,
) -> Self:
    """Parses the stream with stored key.

    Parameters:
        istream: input stream with the key file contents.
        callback: must return passphrase for decryption if called

    Returns:
        The newly constructed key instance.
    """
    slabel, sdata = decode_b64_envelope(istream)
    istream.close()
    if slabel == b"CRYPT4GH PUBLIC KEY":
        return C4GHKey(sdata, True)
    else:
        istreamb = BytesIO(sdata)
        check_c4gh_stream_magic(istreamb)
        kdf_name, kdf_rounds, kdf_salt = parse_c4gh_kdf_options(istreamb)
        cipher_name = decode_c4gh_bytes(istreamb)
        if cipher_name == b"none":
            secret_data = decode_c4gh_bytes(istreamb)
            return C4GHKey(secret_data, False)
        if cipher_name != b"chacha20_poly1305":
            raise Crypt4GHKeyException(
                f"Unsupported cipher: {cipher_name}"
            )
        assert callable(
            callback
        ), "Invalid passphrase callback (non-callable)"
        passphrase = callback().encode()
        symmetric_key = derive_c4gh_key(
            kdf_name, passphrase, kdf_salt, kdf_rounds
        )
        nonce_and_encrypted_data = decode_c4gh_bytes(istreamb)
        nonce = nonce_and_encrypted_data[:12]
        encrypted_data = nonce_and_encrypted_data[12:]
        decrypted_data = ChaCha20Poly1305(symmetric_key).decrypt(
            nonce, encrypted_data, None
        )
        return C4GHKey(decrypted_data, False)

from_string(contents: str, callback: callable = default_passphrase_callback) -> Self classmethod

Converts string to bytes which is opened as binary stream and loads the Crypt4GH key from it.

Parameters:

Name Type Description Default
contents str

complete contents of the file with Crypt4GH key.

 required
callback callable

must return passphrase for decryption if called.

 default_passphrase_callback

Returns:

Type Description
Self

Initialized C4GHKey instance.
Source code in oarepo_c4gh/key/c4gh.py 
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@classmethod
def from_string(
    self, contents: str, callback: callable = default_passphrase_callback
) -> Self:
    """Converts string to bytes which is opened as binary stream
    and loads the Crypt4GH key from it.

    Parameters:
        contents: complete contents of the file with Crypt4GH key.
        callback: must return passphrase for decryption if called.

    Returns:
        Initialized C4GHKey instance.

    """
    return C4GHKey.from_bytes(bytes(contents, "ASCII"), callback)

check_c4gh_kdf(kdf_name: bytes) -> bool

Returns true if given KDF is supported.

Parameters:

Name Type Description Default
kdf_name bytes

KDF name string as bytes

 required

Returns:

Type Description
bool

True if the KDF is supported.
Source code in oarepo_c4gh/key/c4gh.py 
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def check_c4gh_kdf(kdf_name: bytes) -> bool:
    """Returns true if given KDF is supported.

    Parameters:
        kdf_name: KDF name string as bytes

    Returns:
        True if the KDF is supported.
    """
    return kdf_name in C4GH_KDFS

check_c4gh_stream_magic(istreamb: RawIOBase) -> None

Reads enough bytes from given input stream and checks whether they contain the correct Crypt4GH signature. Raises error if it doesn't.

Parameters:

Name Type Description Default
istreamb RawIOBase

input stream with the raw Crypt4GH binary key stream.

 required

Raises:

Type Description
Crypt4GHKeyException

if the signature does not match.
Source code in oarepo_c4gh/key/c4gh.py 
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def check_c4gh_stream_magic(istreamb: RawIOBase) -> None:
    """Reads enough bytes from given input stream and checks whether
    they contain the correct Crypt4GH signature. Raises error if it
    doesn't.

    Parameters:
        istreamb: input stream with the raw Crypt4GH binary key stream.

    Raises:
        Crypt4GHKeyException: if the signature does not match.

    """
    magic_to_check = istreamb.read(len(C4GH_MAGIC_WORD))
    if magic_to_check != C4GH_MAGIC_WORD:
        raise Crypt4GHKeyException("Not a Crypt4GH private key!")

decode_b64_envelope(istream: RawIOBase) -> (bytes, bytes)

Reads PEM-like format and returns its label and decoded bytes.

Parameters:

Name Type Description Default
istream RawIOBase

input stream with the data.

 required

Returns:

Type Description
(bytes, bytes)

Label of the envelope and decoded content bytes.
Source code in oarepo_c4gh/key/c4gh.py 
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def decode_b64_envelope(istream: RawIOBase) -> (bytes, bytes):
    """Reads PEM-like format and returns its label and decoded bytes.

    Parameters:
        istream: input stream with the data.

    Returns:
        Label of the envelope and decoded content bytes.

    """
    lines = list(
        filter(
            lambda line: line,
            map(lambda raw_line: raw_line.strip(), istream.readlines()),
        )
    )
    assert (
        len(lines) >= 3
    ), "At least 3 lines are needed - 2 for envelope and 1 with data."
    assert lines[0].startswith(
        b"-----BEGIN "
    ), f"Must start with BEGIN line {lines[0]}."
    assert lines[-1].startswith(
        b"-----END "
    ), f"Must end with END line {lines[-1]}."
    data = b64decode(b"".join(lines[1:-1]))
    begin_label = lines[0][11:-1].strip(b"-")
    end_label = lines[-1][9:-1].strip(b"-")
    assert (
        begin_label == end_label
    ), f"BEGIN {begin_label} not END {end_label}!"
    return begin_label, data

decode_c4gh_bytes(istream: RawIOBase) -> bytes

Decodes binary string encoded as two-byte big-endian integer length and the actual data that follows this length field.

Parameters:

Name Type Description Default
istream RawIOBase

input stream from which to decode the bytes string.

 required

Returns:

Type Description
bytes

The decoded bytes string.

Raises:

Type Description
Crypt4GHKeyException

if there is not enough data in the stream
Source code in oarepo_c4gh/key/c4gh.py 
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def decode_c4gh_bytes(istream: RawIOBase) -> bytes:
    """Decodes binary string encoded as two-byte big-endian integer
    length and the actual data that follows this length field.

    Parameters:
        istream: input stream from which to decode the bytes string.

    Returns:
        The decoded bytes string.

    Raises:
        Crypt4GHKeyException: if there is not enough data in the stream

    """
    lengthb = istream.read(2)
    lengthb_length = len(lengthb)
    if len(lengthb) != 2:
        raise Crypt4GHKeyException(
            f"Binary string read - not enought data to read the length: "
            f"{lengthb_length} != 2"
        )
    length = int.from_bytes(lengthb, byteorder="big")
    string = istream.read(length)
    read_length = len(string)
    if read_length != length:
        raise Crypt4GHKeyException(
            f"Binary string read - not enough data: {read_length} != {length}"
        )
    return string

default_passphrase_callback() -> None

By default the constructor has no means of obtaining the passphrase and therefore this function unconditionally raises an exception when called.

Source code in oarepo_c4gh/key/c4gh.py 
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def default_passphrase_callback() -> None:
    """By default the constructor has no means of obtaining the
    passphrase and therefore this function unconditionally raises an
    exception when called.

    """
    raise Crypt4GHKeyException("No password callback provided!")

derive_c4gh_key(algo: bytes, passphrase: bytes, salt: bytes, rounds: int) -> bytes

Derives the symmetric key for decrypting the private key.

Parameters:

Name Type Description Default
algo bytes

the algorithm for key derivation

 required
passphrase bytes

the passphrase from which to derive the key

 required
rounds int

number of hashing rounds

 required

Returns:

Type Description
bytes

The derived symmetric key.

Raises:

Type Description
Crypt4GHKeyException

if given KDF algorithm is not supported (should not happen as this is expected to be called after parse_c4gh_kdf_options).
Source code in oarepo_c4gh/key/c4gh.py 
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def derive_c4gh_key(
    algo: bytes, passphrase: bytes, salt: bytes, rounds: int
) -> bytes:
    """Derives the symmetric key for decrypting the private key.

    Parameters:
        algo: the algorithm for key derivation
        passphrase: the passphrase from which to derive the key
        rounds: number of hashing rounds

    Returns:
        The derived symmetric key.

    Raises:
        Crypt4GHKeyException: if given KDF algorithm is not supported (should not happen
            as this is expected to be called after parse_c4gh_kdf_options).
    """
    if algo == b"scrypt":
        from hashlib import scrypt

        return scrypt(passphrase, salt=salt, n=1 << 14, r=8, p=1, dklen=32)
    if algo == b"bcrypt":
        import bcrypt

        return bcrypt.kdf(
            passphrase,
            salt=salt,
            desired_key_bytes=32,
            rounds=rounds,
            ignore_few_rounds=True,
        )
    if algo == b"pbkdf2_hmac_sha256":
        from hashlib import pbkdf2_hmac

        return pbkdf2_hmac("sha256", passphrase, salt, rounds, dklen=32)
    raise Crypt4GHKeyException(f"Unsupported KDF: {algo}")

parse_c4gh_kdf_options(istreamb: RawIOBase) -> (bytes, int, bytes)

Parses KDF name and options (if applicable) from given input stream.

Parameters:

Name Type Description Default
istreamb RawIOBase

input stream with the raw Crypt4GH binary stream.

 required

Returns:

Name Type Description
kdf_name (bytes, int, bytes)

the name of the KDF as binary string
kdf_rounds (bytes, int, bytes)

number of hashing rounds for KDF
kdf_salt (bytes, int, bytes)

salt for initializing the hashing

Raises:

Type Description
Crypt4GHKeyException

if parsed KDF name is not supported
Source code in oarepo_c4gh/key/c4gh.py 
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def parse_c4gh_kdf_options(istreamb: RawIOBase) -> (bytes, int, bytes):
    """Parses KDF name and options (if applicable) from given input
    stream.

    Parameters:
        istreamb: input stream with the raw Crypt4GH binary stream.

    Returns:
        kdf_name: the name of the KDF as binary string
        kdf_rounds: number of hashing rounds for KDF
        kdf_salt: salt for initializing the hashing

    Raises:
        Crypt4GHKeyException: if parsed KDF name is not supported

    """
    kdf_name = decode_c4gh_bytes(istreamb)
    if kdf_name == b"none":
        return (kdf_name, None, None)
    elif check_c4gh_kdf(kdf_name):
        kdf_options = decode_c4gh_bytes(istreamb)
        kdf_rounds = int.from_bytes(kdf_options[:4], byteorder="big")
        kdf_salt = kdf_options[4:]
        return (kdf_name, kdf_rounds, kdf_salt)
    else:
        raise Crypt4GHKeyException(f"Unsupported KDF {kdf_name}")

oarepo_c4gh.key.key_collection

This module implements a key collection that is to be used when reading the container header packets instead to support multiple available reader keys.

KeyCollection

This class implements a simple storage for a collection of reader keys and gives a reusable iterator which is guaranteed to iterate over all the keys at most once. Each round of iterations starts with the last key was used in the previous round. This ensures that if a reader key successfully reads a packet, it will always be the first to try for the very next packet.

Source code in oarepo_c4gh/key/key_collection.py 
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class KeyCollection:
    """This class implements a simple storage for a collection of
    reader keys and gives a reusable iterator which is guaranteed to
    iterate over all the keys at most once. Each round of iterations
    starts with the last key was used in the previous round. This
    ensures that if a reader key successfully reads a packet, it will
    always be the first to try for the very next packet.

    """

    def __init__(self, *keys: List[Key]) -> None:
        """Initializes the collection with a list of keys.

        Parameters:
            keys: list of instances of classes implementing the Key Protocol

        Raises:
            Crypt4GHKeyException: if some key(s) do not have access to
                                  private part or no keys were given

        """
        if len(keys) == 0:
            raise Crypt4GHKeyException("Collection needs at least one key")
        for key in keys:
            if not key.can_compute_symmetric_keys:
                raise Crypt4GHKeyException(
                    "KeyCollection is only for keys with access to private key"
                )
        self._keys = keys
        self._current = 0

    @property
    def count(self) -> int:
        """Returns the number of keys in this collection."""
        return len(self._keys)

    @property
    def keys(self) -> Generator[Key, None, None]:
        """Multiple-use iterator that yields each key at most
        once. When re-used, the iteration always starts with the most
        recently yielded key.

        """
        first_current = self._current
        while True:
            yield self._keys[self._current]
            self._current = (self._current + 1) % self.count
            if self._current == first_current:
                break

count: int property

Returns the number of keys in this collection.

keys: Generator[Key, None, None] property

Multiple-use iterator that yields each key at most once. When re-used, the iteration always starts with the most recently yielded key.

__init__(*keys: List[Key]) -> None

Initializes the collection with a list of keys.

Parameters:

Name Type Description Default
keys List[Key]

list of instances of classes implementing the Key Protocol

 ()

Raises:

Type Description
Crypt4GHKeyException

if some key(s) do not have access to private part or no keys were given
Source code in oarepo_c4gh/key/key_collection.py 
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def __init__(self, *keys: List[Key]) -> None:
    """Initializes the collection with a list of keys.

    Parameters:
        keys: list of instances of classes implementing the Key Protocol

    Raises:
        Crypt4GHKeyException: if some key(s) do not have access to
                              private part or no keys were given

    """
    if len(keys) == 0:
        raise Crypt4GHKeyException("Collection needs at least one key")
    for key in keys:
        if not key.can_compute_symmetric_keys:
            raise Crypt4GHKeyException(
                "KeyCollection is only for keys with access to private key"
            )
    self._keys = keys
    self._current = 0